Almond Flour Gluten-Free Zucchini Muffins
These Almond Flour Gluten-Free Zucchini Muffins are a reliable, everyday bake: moist, lightly spiced, and pleasantly tender thanks to almond flour and fresh zucchini. They come together quickly, use pantry-friendly ingredients, and hold up well for breakfasts, snacks, or lunchbox treats.
I test recipes for a living, so I value clarity and small tricks that save time and improve results. Expect straightforward steps, a short ingredient list, and practical storage tips so your muffins stay soft without getting soggy.
No special skills required. Read through the ingredient notes and the step-by-step instructions once, prep your pan, and you’ll be ready to bake in under 15 minutes.
What to Buy

- ½ cup Coconut Flour — lightweight, very absorbent; balances moisture from zucchini.
- 1 ½ cups Almond Flour — provides structure, tenderness, and a mildly nutty flavor.
- 1 teaspoon Baking Soda — the leavening agent that gives lift.
- ½ teaspoon Pumpkin Pie Spice — adds warm spice notes; you can use cinnamon if you prefer.
- 3 Eggs — binders and provide richness.
- 6 oz Greek yogurt — adds moisture and a touch of tang; use full-fat for best texture.
- ½ cup Sugar or coconut sugar — sweetens and helps with browning; adjust slightly to taste.
- 1 ½ cups shredded zucchini (1 whole large zucchini) — fresh shredded zucchini adds moisture and a subtle veggie note. Squeeze lightly if very wet.
How to Prepare Almond Flour Gluten-Free Zucchini Muffins
Follow these steps in order. The ingredient amounts above are the source of truth; the directions below are clarified for home baking.
- Preheat the oven to 350°F (175°C). Line a 12-cup muffin tin with paper liners or grease the cups well.
- Trim the ends off the zucchini. Grate the zucchini into shreds until you have about 1 ½ cups (this equals one large zucchini). If the zucchini seems very watery, press it gently in a clean kitchen towel or paper towel to remove excess moisture—don’t over-dry it.
- In a small bowl, whisk together ½ cup coconut flour, 1 ½ cups almond flour, 1 teaspoon baking soda, and ½ teaspoon pumpkin pie spice until evenly combined. Set aside.
- In the bowl of a stand mixer (or a large mixing bowl if using a hand mixer), add ½ cup sugar (or coconut sugar), 6 oz Greek yogurt, and 3 eggs. Beat on medium speed until the sugar is incorporated and the mixture is smooth—about 1 to 2 minutes.
- With the mixer on low to medium speed, add the dry flour mixture a little at a time to the wet mixture. Mix until just combined and no large pockets of dry ingredients remain. Scrape the bowl as needed to ensure even mixing.
- Fold the 1 ½ cups shredded zucchini into the batter until distributed evenly. Mix briefly—do not overmix.
- Divide the batter evenly among the prepared muffin cups. This recipe makes approximately 12 large muffins. Fill each cup about three-quarters full.
- Bake in the preheated 350°F oven for 30–35 minutes, or until the tops are golden and a toothpick inserted into the center comes out clean or with a few moist crumbs but no wet batter.
- Remove the muffins from the oven and allow them to cool in the pan for 5–10 minutes. Then transfer to a wire rack to cool completely or to warm, depending on how you like to serve them.
Top Reasons to Make Almond Flour Gluten-Free Zucchini Muffins
- Gluten-free and grain-free: almond and coconut flours keep these muffins suitable for those avoiding wheat.
- Moist texture: shredded zucchini and Greek yogurt deliver a tender crumb without being heavy.
- Quick to assemble: no complicated steps or long prep—ideal for weekday baking.
- Versatile: eat them plain, spread with nut butter, or serve alongside savory breakfasts.
- Reliable lift: baking soda and eggs give a consistent rise even without traditional wheat flour.
Smart Substitutions

- Greek yogurt — swap with plain dairy-free yogurt if you need dairy-free, but texture will be slightly different.
- Sugar — coconut sugar or cane sugar both work; reduce slightly if you prefer less sweet.
- Pumpkin pie spice — use ½ teaspoon cinnamon plus a pinch of nutmeg if you don’t have the mix.
- Almond flour — blanched almond flour is best. Do not replace with almond meal (coarser) without expectable texture changes.
- Coconut flour — very absorbent; do not add more than listed or the batter will dry out.
Must-Have Equipment

- 12-cup muffin tin — makes the correct-sized muffins called for in the recipe.
- Box grater or food processor — for shredding zucchini quickly.
- Stand mixer or hand mixer — speeds up mixing and ensures the sugar dissolves into the eggs and yogurt.
- Mixing bowls — one small bowl for dry ingredients, one larger bowl for wet.
- Measuring cups/spoons — accurate measuring is important with almond and coconut flours.
- Wire rack — for cooling the muffins evenly after baking.
Don’t Do This
- Don’t skip lining or greasing the muffin tin—almond-based batters can stick more than wheat-based ones.
- Don’t overload the zucchini with moisture—excess water will make the batter too loose and extend baking time.
- Don’t replace coconut flour with more almond flour at a 1:1 ratio—coconut flour soaks up liquid and the recipe proportions are balanced for the listed amount.
- Don’t overbake trying to get a darker top; check at 30 minutes and rely on a toothpick rather than color alone.
Better Choices & Swaps
- Use blanched almond flour rather than almond meal for a lighter texture and less grit.
- Choose full-fat Greek yogurt for the best moisture and structure; low-fat versions can yield drier muffins.
- Prefer coconut sugar for a deeper flavor and less refined sweetness, but regular granulated sugar works fine.
- If you want nuttier notes, fold in ¼ cup chopped walnuts or pecans (optional add-in, not in source ingredients).
Chef’s Notes
- Measure flours by spooning into the cup and leveling—packing almond flour can lead to dense muffins.
- Let the batter rest 5 minutes before filling tins if your flours look thirsty; coconut flour may absorb a bit and thicken the batter.
- To test doneness, insert a toothpick in the center; a few moist crumbs are fine but no wet batter.
- Paper liners help with easy removal; if skipping liners, butter and a light dusting of almond flour in the cups prevents sticking.
Make-Ahead & Storage
- Room temperature: store in an airtight container for up to 2 days.
- Refrigerator: keep for up to 5 days in a sealed container—bring to room temperature or warm briefly before serving.
- Freezer: freeze individual muffins in a freezer bag for up to 3 months. Thaw at room temperature or microwave for 20–30 seconds.
- To refresh: warm in a 325°F oven for 5–8 minutes to revive the crumb if slightly stale.
Your Top Questions
- Can I omit the sugar? You can reduce the sugar, but the texture and browning will change. Try ¼–⅓ cup if you prefer less sweetness.
- Will this work with shredded carrot instead of zucchini? Yes—carrot works, but it may make the muffins slightly sweeter and denser.
- Do I need to squeeze the zucchini? Only if it’s very wet. A light squeeze removes excess water without drying the vegetable out.
- Why both coconut and almond flour? Coconut flour soaks up moisture and helps structure the crumb when used in small amounts; almond flour gives tenderness and flavor.
Let’s Eat
Serve these Almond Flour Gluten-Free Zucchini Muffins warm with a smear of butter or almond butter, or pack them for a quick, grab-and-go breakfast. They pair well with coffee or tea and make an easy, satisfying snack. Follow the recipe steps and storage tips above, and you’ll have a dependable batch of moist, lightly spiced muffins every time.

Almond Flour Gluten-Free Zucchini Muffins
Ingredients
- 1/2 cup coconut flour
- 1 1/2 cup almond flour
- 1 teaspoon baking soda
- 1/2 teaspoon pumpkin pie spice
- 3 eggs
- 6 oz Greek yogurt
- 1/2 cup sugar or coconut sugar
- 1 1/2 cups shredded zucchini (about 1 large zucchini)
Instructions
- Preheat the oven to 350°F (175°C) and line a 12-cup muffin pan with liners.
- Trim the zucchini ends and grate the zucchini; gently squeeze to remove excess moisture if it seems very wet.
- In a small bowl, whisk together the coconut flour, almond flour, baking soda, and pumpkin pie spice until evenly combined.
- In a large bowl or the bowl of a stand mixer, beat the sugar, Greek yogurt, and eggs until the sugar is incorporated and the mixture is smooth.
- Add the dry flour mixture to the wet ingredients a little at a time, mixing on medium speed until just combined.
- Fold the shredded zucchini into the batter until evenly distributed.
- Spoon the batter into the prepared muffin cups, filling each about three-quarters full to make 12 large muffins.
- Bake for 30–35 minutes, or until a toothpick inserted into the center comes out clean or with a few moist crumbs.
- Allow the muffins to cool in the pan for 5–10 minutes, then transfer to a wire rack to cool completely.
Equipment
- muffin pan
- muffin liners
- box grater or food processor
- large mixing bowl
- small bowl
- Hand mixer or stand mixer
- Measuring cups and spoons
- Spatula
Notes
- Use a large zucchini to yield about 1½ cups shredded zucchini.
- Gently squeeze shredded zucchini if very watery to avoid thinning the batter.
- Line the muffin pan for easy removal.
- Bake until a toothpick comes out mostly clean.
