Preheat oven to 350°F (175°C). Lightly grease two 12-cup muffin tins or line with paper liners.
In a large bowl, whisk together the melted coconut oil, applesauce, honey, molasses, eggs, and vanilla until smooth.
In a separate bowl, whisk the whole wheat flour, baking soda, baking powder, salt, and cinnamon until evenly combined.
Add the dry ingredients to the wet ingredients and stir gently just until combined; avoid overmixing.
Fold in the cooled cooked quinoa and the shredded kale until evenly distributed but not overworked.
Spoon batter into the prepared muffin cups, filling each about three-quarters full.
Bake for 18–22 minutes, or until a toothpick inserted into a muffin center comes out clean.
Remove muffins from the tins and transfer to a wire rack to cool completely.